Analytical methods | |||||
---|---|---|---|---|---|
Comparative study | #1 | #2 | #3 | #4 | |
Chromatography | GC | GC | GC | GC | |
Ion source | EI | EI | EI | EI | |
Positive/Negative mode | – | – | – | – | |
Mass analyzer | TOF | TOF | TOF | TOF | |
Identification level | – | – | – | – |
Sample information | |||||
---|---|---|---|---|---|
Comparative study | #1 | #2 | #3 | #4 | |
Country | US | US | US | US | |
Specimen | serum | serum | plasma | plasma | |
Marker function | diagnosis | diagnosis | diagnosis | diagnosis | |
Participants(Case) | Cancer type | adenocarcinoma | adenocarcinoma | adenocarcinoma | adenocarcinoma |
Stage | I, II, III, IV | I, II, III, IV | I, II, III, IV | I, II, III, IV | |
Number | 49 | 43 | 52 | 43 | |
Gender (M,F) | 17, 32 | 21, 22 | 17, 35 | 21, 22 | |
Mean age (range) (M,F) | 65.9 ± 9.87 | 67.3 ± 10.10 | 65.9 ± 9.66 | 67.3 ± 10.10 | |
Smoking status | – | – | – | – | |
Participants(Control) | Type | healthy | healthy | healthy | healthy |
Number | 31.0 | 43.0 | 31.0 | 43.0 | |
Gender (M,F) | 11, 20 | 21, 22 | 11, 20 | 21, 22 | |
Mean age (range) (M,F) | 64.1 ± 8.97 | 65.9 ± 8.05 | 64.1 ± 8.97 | 65.9 ± 8.05 | |
Smoking status | – | – | – | – |
Data processing and metabolite identification | |
---|---|
Data processing software | – |
Database search | UC Davis Metabolomics BinBase database |
Statistics and concentration information | |
---|---|
Differential analysis method | regress (by the covariates: age, gender and smoking history [packs per year]), permutation test |
Classification method | random forest |
Survival analysis method | – |
Metabolite | Comparative study | Author-emphasized biomarkers | Mean concentration (case) | Mean concentration (control) | Fold change (case/control) | P-value | FDR | VIP |
---|
Metabolite | Comparative study | Author-emphasized biomarkers | Mean concentration (case) | Mean concentration (control) | Fold change (case/control) | P-value | FDR | VIP |
---|---|---|---|---|---|---|---|---|
3-phosphoglycerate | – | V | 101 ± 64 | 141 ± 171 | 0.72 | 0.846 | 0.947 | – |
tryptophan | – | V | 14276 ± 4817 | 15614 ± 6000 | 0.91 | 0.505 | 0.74 | – |
xylose | – | V | 1035 ± 792 | 1140 ± 729 | 0.908 | 0.164 | 0.439 | – |
maltose | – | V | 183 ± 200 | 132 ± 169 | 1.38 | 0.078 | 0.258 | – |
cystine | – | V | 3886 ± 1676 | 4929 ± 1579 | 0.79 | 0.052 | 0.201 | – |
citrulline | – | V | 359 ± 191 | 461 ± 169 | 0.78 | 0.003 | 0.037 | – |
maltotriose | – | V | 133 ± 107 | 97 ± 146 | 1.36 | 0.003 | 0.038 | – |
tryptophan | – | V | 17526 ± 10639 | 24922 ± 9245 | 0.7 | 0.001 | 0.047 | – |
3-phosphoglycerate | – | V | 269 ± 190 | 151 ± 84 | 1.78 | 0 | 0.003 | – |
adenosine-5-phosphate | – | V | 440 ± 346 | 203 ± 177 | 2.16 | 0 | 0.002 | – |
Metabolite | Comparative study | Author-emphasized biomarkers | Cutoff value | AUROC (95%CI) | Sensitivity (%) | Specificity (%) | Accuracy (%) |
---|
Metabolite | Comparative study | Author-emphasized biomarkers | Cutoff value | AUROC (95%CI) | Sensitivity (%) | Specificity (%) | Accuracy (%) |
---|---|---|---|---|---|---|---|
3-phosphoglycerate | – | V | – | maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline=0.699 (0.583, 0.815) maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.670 (0.552, 0.789) | 30.2 maltose+maltotriose+cystine+3-Phosphoglycerate=61.6 | 72.1 maltose+maltotriose+cystine+3-Phosphoglycerate=76.7 | 51.2 maltose+maltotriose+cystine+3-Phosphoglycerate=69.2 |
tryptophan | – | V | – | maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.670 (0.552, 0.789) | 39.5 maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan=60.5 | 65.1 maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan=93.0 | 52.3 maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan=76.7 |
xylose | – | V | – | Bin_225393+aspartate+xylose+glutamate=0.820 (0.729, 0.911) Bin_225393+aspartate+xylose=0.806 (0.711, 0.901) | 76.7 Bin_225393+aspartate+xylose=74.4 | 23.3 Bin_225393+aspartate+xylose=53.5 | 50.0 Bin_225393+aspartate+xylose=67.4 |
maltose | – | V | – | 0.617 (0.496, 0.738) maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline=0.699 (0.583, 0.815) maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.670 (0.552, 0.789) | 55.8 | 69.8 | 62.8 |
cystine | – | V | – | maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline=0.699 (0.583, 0.815) maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.670 (0.552, 0.789) | 58.1 maltose+maltotriose+cystine=69.8 | 79.1 maltose+maltotriose+cystine=69.8 | 68.6 maltose+maltotriose+cystine=69.8 |
citrulline | – | V | – | maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline=0.699 (0.583, 0.815) maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.670 (0.552, 0.789) | 55.8 maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline=65.1 | 76.7 maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline=81.4 | 66.3 |
maltotriose | – | V | – | maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline=0.699 (0.583, 0.815) maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.670 (0.552, 0.789) | 79.1 maltose+maltotriose=67.4 | 48.8 maltose+maltotriose=59.3 | 64 maltose+maltotriose=63.4 |
tryptophan | – | V | – | maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.883 (0.812, 0.955) | – | – | 50.6 maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan=77.1 |
3-phosphoglycerate | – | V | – | maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline=0.880 (0.805, 0.954) maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.883 (0.812, 0.955) | – | – | 69.9 maltose+maltotriose+cystine+3-Phosphoglycerate=76.5 |
adenosine-5-phosphate | – | V | – | maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=0.883 (0.812, 0.955) | – | – | 68.7 maltose+maltotriose+cystine+3-Phosphoglycerate+citrulline+pyrophosphate+tryptophan+adenosine-5-Phosphate=75.3 |