610 collected human ribosome profiling data sets
Ribo-seq data name SRR number GEO number Topic Cell line Authors Pubmed ID Year
Footprint mock 32hr runs1-2 SRR057511_12GSE22004microRNA Regulatory Effect HeLa Cell Guo et al. 20703300 2010
Footprint miR-155 32hr runs1-2 SRR057516_17GSE22004microRNA Regulatory Effect HeLa Cell Guo et al. 20703300 2010
Footprint miR-1 32hr runs1-2 SRR057521_22GSE22004microRNA Regulatory Effect HeLa Cell Guo et al. 20703300 2010
Footprint mock 12hr run1 SRR057526GSE22004microRNA Regulatory Effect HeLa Cell Guo et al. 20703300 2010
Footprint miR-155 12hr run1 SRR057529GSE22004microRNA Regulatory Effect HeLa Cell Guo et al. 20703300 2010
Footprint miR-1 12hr run1 SRR057532GSE22004microRNA Regulatory Effect HeLa Cell Guo et al. 20703300 2010
Footprint wild-type runs1-2 SRR065774_75GSE22001microRNA Regulatory Effect HeLa Cell Guo et al. 20703300 2010
Footprint mir-223-knockout runs1-2 SRR065779_80GSE22001microRNA Regulatory Effect HeLa Cell Guo et al. 20703300 2010
Ribosome Profiling with Control siRNA SRR1042900GSE52976Translational Regulation Mechanism HEK293 Cell Yoon et al. 25366541 2014
Ribosome Profiling with AUF1 siRNA SRR1042901GSE52976Translational Regulation Mechanism HEK293 Cell Yoon et al. 25366541 2014
Ribosome Profiling with HuR siRNA SRR1042902GSE52976Translational Regulation Mechanism HEK293 Cell Yoon et al. 25366541 2014
Control riboseq, replicate 2 SRR11739_09_10GSE55195Stress Condition HEK293 Cell Andreev et al. 25621764 2015
Arsenite riboseq, replicate 2 SRR11739_13_14GSE55195Stress Condition HEK293 Cell Andreev et al. 25621764 2015
Control riboseq, replicate 1 SRR1173905GSE55195Stress Condition HEK293 Cell Andreev et al. 25621764 2015
Arsenite riboseq, replicate 1 SRR1173907GSE55195Stress Condition HEK293 Cell Andreev et al. 25621764 2015
9962X8 c.40 41del RPF SRR1204655GSE56148Disease Muscle Tissue Wein et al. 25108525 2014
9962X9 normal RPF SRR1204656GSE56148Disease Muscle Tissue Wein et al. 25108525 2014
WT ribo profile CT00 rep1 SRR1257225GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT02 rep1 SRR1257226GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT04 rep1 SRR1257227GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT06 rep1 SRR1257228GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT08 rep1 SRR1257229GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT10 rep1 SRR1257230GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT12 rep1 SRR1257231GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT14 rep1 SRR1257232GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT16 rep1 SRR1257233GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT18 rep1 SRR1257234GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT20 rep1 SRR1257235GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT22 rep1 SRR1257236GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT00 rep2 SRR1257237GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT02 rep2 SRR1257238GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT04 rep2 SRR1257239GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT06 rep2 SRR1257240GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT08 rep2 SRR1257241GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT10 rep2 SRR1257242GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT12 rep2 SRR1257243GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT14 rep2 SRR1257244GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT16 rep2 SRR1257245GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT18 rep2 SRR1257246GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT20 rep2 SRR1257247GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
WT ribo profile CT22 rep2 SRR1257248GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT00 rep1 SRR1257249GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT02 rep1 SRR1257250GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT04 rep1 SRR1257251GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT06 rep1 SRR1257252GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT08 rep1 SRR1257253GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT10 rep1 SRR1257254GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT12 rep1 SRR1257255GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT14 rep1 SRR1257256GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT16 rep1 SRR1257257GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT18 rep1 SRR1257258GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT20 rep1 SRR1257259GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT22 rep1 SRR1257260GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT00 rep2 SRR1257261GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT02 rep2 SRR1257262GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT04 rep2 SRR1257263GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT06 rep2 SRR1257264GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT08 rep2 SRR1257265GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT10 rep2 SRR1257266GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT12 rep2 SRR1257267GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT14 rep2 SRR1257268GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT16 rep2 SRR1257269GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT18 rep2 SRR1257270GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT20 rep2 SRR1257271GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Bmal1 kd ribo profile CT22 rep2 SRR1257272GSE56924Circadian Rhythms U2OS Cell Jang et al. 26338483 2015
Cycloheximide treated HCT116 SRR1333393GSE58207RPF Methodology, Translational Regulation Mechanism HCT116 Cell Crappe et al. 25510491 2015
Lactimidomycin treated HCT116 SRR1333394GSE58207RPF Methodology, Translational Regulation Mechanism HCT116 Cell Crappe et al. 25510491 2015
vector control Ribo-seq SRR1507056GSE59095Translational Regulation Mechanism, Cancer Mechanism Medulloblastoma Cell|HEK293 Cell Valentin-Vega et al. 27180681 2016
WT DDX3X Ribo-seq SRR1507057GSE59095Translational Regulation Mechanism, Cancer Mechanism Medulloblastoma Cell|HEK293 Cell Valentin-Vega et al. 27180681 2016
G325E Ribo-seq SRR1507058GSE59095Translational Regulation Mechanism, Cancer Mechanism Medulloblastoma Cell|HEK293 Cell Valentin-Vega et al. 27180681 2016
SUM1315 control RP SRR1528630GSE59815Cancer Mechanism, Stress Condition SUM1315 Cell Loayza-Puch et al. 26878238 2016
SUM1315 harringtonine RP SRR1528631GSE59815Cancer Mechanism, Stress Condition SUM1315 Cell Loayza-Puch et al. 26878238 2016
MCF10A control RP SRR1528632_33GSE59816Cancer Mechanism, Stress Condition MCF10A Cell Loayza-Puch et al. 26878238 2016
Kidney normal tissue 1 RP SRR1528686_87GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney normal tissue 2 RP SRR1528688_89GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue 1 RP SRR1528690_91GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue 2 RP SRR1528692_93GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue 3 RP SRR1528694_95GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue 4 RP SRR1528696_97GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
RP mock - Rep 1 SRR1535516_18GSE60040Virus Infection Human Foreskin Fibroblast Cell Rutkowski et al. 25989971 2015
RP 2 h p.i. - Rep 1 SRR1535522_24GSE60040Virus Infection Human Foreskin Fibroblast Cell Rutkowski et al. 25989971 2015
RP 4 h p.i. - Rep 1 SRR1535525_27GSE60040Virus Infection Human Foreskin Fibroblast Cell Rutkowski et al. 25989971 2015
RP 8 h p.i. - Rep 1 SRR1535531_33GSE60040Virus Infection Human Foreskin Fibroblast Cell Rutkowski et al. 25989971 2015
RP mock - Rep 2 SRR1535534_36GSE60040Virus Infection Human Foreskin Fibroblast Cell Rutkowski et al. 25989971 2015
RP 1 h p.i. - Rep 2 SRR1535537_39GSE60040Virus Infection Human Foreskin Fibroblast Cell Rutkowski et al. 25989971 2015
RP 4 h p.i. - Rep 2 SRR1535543_45GSE60040Virus Infection Human Foreskin Fibroblast Cell Rutkowski et al. 25989971 2015
RP 8 h p.i. - Rep 2 SRR1535549_51GSE60040Virus Infection Human Foreskin Fibroblast Cell Rutkowski et al. 25989971 2015
input HEK SRR1536302_03GSE60095Translational Regulation Mechanism HEK293 Cell Ingolia et al. 25159147 2014
bound HEK SRR1536304_05GSE60095Translational Regulation Mechanism HEK293 Cell Ingolia et al. 25159147 2014
wild-type B cell 2 h RPF SRR1551122_23GSE60426microRNA Regulatory Effect B Cell Eichhorn et al. 25263593 2014
wild-type B cell 4 h RPF SRR1551124_25GSE60426microRNA Regulatory Effect B Cell Eichhorn et al. 25263593 2014
wild-type B cell 8 h RPF SRR1551126_27GSE60426microRNA Regulatory Effect B Cell Eichhorn et al. 25263593 2014
wild-type B cell 48 h RPF SRR1551128_32GSE60426microRNA Regulatory Effect B Cell Eichhorn et al. 25263593 2014
miR-155 knockout B cell 2h RPF SRR1551140_41GSE60426microRNA Regulatory Effect B Cell Eichhorn et al. 25263593 2014
miR-155 knockout B cell 4h RPF SRR1551142_43GSE60426microRNA Regulatory Effect B Cell Eichhorn et al. 25263593 2014
miR-155 knockout B cell 8h RPF SRR1551144_45GSE60426microRNA Regulatory Effect B Cell Eichhorn et al. 25263593 2014
miR-155 knockout B cell 48h RPF SRR1551146_51GSE60426microRNA Regulatory Effect B Cell Eichhorn et al. 25263593 2014
mock-transfected U2OS RPF SRR1551155GSE60426microRNA Regulatory Effect U2OS Cell Eichhorn et al. 25263593 2014
miR-1-transfected U2OS RPF SRR1551159GSE60426microRNA Regulatory Effect U2OS Cell Eichhorn et al. 25263593 2014
miR-155-transfected U2OS RPF SRR1551163GSE60426microRNA Regulatory Effect U2OS Cell Eichhorn et al. 25263593 2014
mock-transfected HEK293T RPF SRR1551165GSE60426microRNA Regulatory Effect HEK293 Cell Eichhorn et al. 25263593 2014
miR-1-transfected HEK293T RPF SRR1551167GSE60426microRNA Regulatory Effect HEK293 Cell Eichhorn et al. 25263593 2014
NormalHumanRiboProfilingA SRR1562539GSE51424Translational Regulation Mechanism Mouse Brain Tissue Gonzalez et al. 25122893 2014
NormalHumanRiboProfilingB SRR1562540GSE51424Translational Regulation Mechanism Mouse Brain Tissue Gonzalez et al. 25122893 2014
NormalHumanRiboProfilingC SRR1562541GSE51424Translational Regulation Mechanism Mouse Brain Tissue Gonzalez et al. 25122893 2014
TumorHumanRiboProfilingA SRR1562542GSE51424Translational Regulation Mechanism Mouse Brain Tissue Gonzalez et al. 25122893 2014
TumorHumanRiboProfilingB SRR1562543GSE51424Translational Regulation Mechanism Mouse Brain Tissue Gonzalez et al. 25122893 2014
BirAmCherrySec61beta +CHX 10minBiotin input SRR1562929GSE61012Translational Regulation Mechanism HEK293 Cell Jan et al. 25378630 2014
BirAmCherrySec61beta +CHX 10minBiotin pulldown SRR1562930GSE61012Translational Regulation Mechanism HEK293 Cell Jan et al. 25378630 2014
FP dmso 1hr SRR1573930GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
FP dmso 2hr SRR1573931GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
FP silvestrol 1hr SRR1573932GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
FP silvestrol 2hr SRR1573933GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
FP untreated SRR1573934GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
FP dmso 2hr br SRR1573937GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
FP silvestrol 2hr br SRR1573938GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
FP dmso SRR1573939GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
FP ink128 SRR1573940GSE61375Translational Regulation Mechanism MDA-MB-231 Cell Rubio et al. 25273840 2014
mock-transfected ribosome profiling SRR1598971GSE51584microRNA Regulatory Effect U2OS Cell Guo et al. 25070500 2014
miR-1-transfected ribosome profiling SRR1598975GSE51584microRNA Regulatory Effect U2OS Cell Guo et al. 25070500 2014
miR-155-transfected ribosome profiling SRR1598981GSE51584microRNA Regulatory Effect U2OS Cell Guo et al. 25070500 2014
ribo hES shControl replicate1 SRR1610244GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND1 shControl replicate1 SRR1610245GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND3 shControl replicate1 SRR1610246GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND6 shControl replicate1 SRR1610247GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo hES shKBTBD8 replicate1 SRR1610248GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND1 shKBTBD8 replicate1 SRR1610249GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND3 shKBTBD8 replicate1 SRR1610250GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND6 shKBTBD8 replicate1 SRR1610251GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo hES shControl replicate2 SRR1610252GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND1 shControl replicate2 SRR1610253GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND3 shControl replicate2 SRR1610254GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND6 shControl replicate2 SRR1610255GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo hES shKBTBD8 replicate2 SRR1610256GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND1 shKBTBD8 replicate2 SRR1610257GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND3 shKBTBD8 replicate2 SRR1610258GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND6 shKBTBD8 replicate2 SRR1610259GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
Rec-OE NCCIT Ribosome profiling (RPF) SRR1660328_31GSE63570Virus Infection Embryos and Pluripotent Cell Grow et al. 25896322 2015
WT control NCCIT Ribosome profiling (RPF) SRR1660332_35GSE63570Virus Infection Embryos and Pluripotent Cell Grow et al. 25896322 2015
Ribosome profiling rep1-SiControl-RPF SRR1661491GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling rep1-SiControl-input-ribominus SRR1661492GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling rep1-SiYTHDF1 1-RPF SRR1661493GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling rep1-SiYTHDF1 1-input-ribominus SRR1661494GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling rep2-SiControl-RPF SRR1661495GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling rep2-SiControl-input-ribominus SRR1661496GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling rep2-SiYTHDF1 8-RPF SRR1661497GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling rep2-SiYTHDF1 8-input-ribominus SRR1661498GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
1 wt d-leucine rep1 RPF SRR1758378GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
2 wt l-leucine rep1 RPF SRR1758379GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
5 corr d-leucine rep1 RPF SRR1758380GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
6 corr l-leucine rep1 RPF SRR1758381GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
5 corr d-leucine rep2 RPF SRR1758390GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
6 corr l-leucine rep2 RPF SRR1758391GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
7 corr d-leucine rep2 RPF SRR1758392GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
8 corr l-leucine rep2 RPF SRR1758393GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
9 mut d-leucine rep2 RPF SRR1758394GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
10 mut l-leucine rep2 RPF SRR1758395GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
11 mut d-leucine rep2 RPF SRR1758396GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
12 mut l-leucine rep2 RPF SRR1758397GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
5 corr d-leucine rep3 RPF SRR1758406GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
6 corr l-leucine rep3 RPF SRR1758407GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
7 corr d-leucine rep3 RPF SRR1758408GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
8 corr l-leucine rep3 RPF SRR1758409GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
9 mut d-leucine rep3 RPF SRR1758410GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
10 mut l-leucine rep3 RPF SRR1758411GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
11 mut d-leucine rep3 RPF SRR1758412GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
12 mut l-leucine rep3 RPF SRR1758413GSE64962Disease, mTOR Pathway RBS Cell Xu et al. 26729373 2016
ribo untr a SRR1795425_26GSE65778Translational Regulation Mechanism, Stress Condition HEK293 Cell Sidrauski et al. 25719440 2015
ribo untr b SRR1795427_28GSE65778Translational Regulation Mechanism, Stress Condition HEK293 Cell Sidrauski et al. 25719440 2015
ribo isrib a SRR1795429_30GSE65778Translational Regulation Mechanism, Stress Condition HEK293 Cell Sidrauski et al. 25719440 2015
ribo isrib b SRR1795431_32GSE65778Translational Regulation Mechanism, Stress Condition HEK293 Cell Sidrauski et al. 25719440 2015
ribo tm a SRR1795433_34GSE65778Translational Regulation Mechanism, Stress Condition HEK293 Cell Sidrauski et al. 25719440 2015
ribo tm b SRR1795435_36GSE65778Translational Regulation Mechanism, Stress Condition HEK293 Cell Sidrauski et al. 25719440 2015
ribo tmisrib a SRR1795437_38GSE65778Translational Regulation Mechanism, Stress Condition HEK293 Cell Sidrauski et al. 25719440 2015
ribo tmisrib b SRR1795439_40GSE65778Translational Regulation Mechanism, Stress Condition HEK293 Cell Sidrauski et al. 25719440 2015
ERSrcTAM00hr chx rep1 SRR1802129GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM01hr chx rep1 SRR1802130GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM04hr chx rep1 SRR1802131GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM24hr chx rep1 SRR1802132GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM00hr harr rep1 SRR1802133GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM01hr harr rep1 SRR1802134GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM04hr harr rep1 SRR1802135GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM24hr harr rep1 SRR1802136GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcEtOH01hr chx rep2 SRR1802137GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcEtOH04hr chx rep2 SRR1802138GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcEtOH24hr chx rep2 SRR1802139GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM01hr chx rep2 SRR1802140GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM04hr chx rep2 SRR1802141GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
ERSrcTAM24hr chx rep2 SRR1802142GSE65885Cancer Mechanism MCF10A Cell Ji et al. 26900662 2016
EH chx rep1 SRR1802146GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
EL chx rep1 SRR1802147GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
ELR chx rep1 SRR1802148GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
EH harr rep1 SRR1802149GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
EL harr rep1 SRR1802150GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
ELR harr rep1 SRR1802151GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
EH chx rep2 SRR1802152GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
EL chx rep2 SRR1802153GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
ELR chx rep2 SRR1802154GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
EH harr rep2 SRR1802155GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
EL harr rep2 SRR1802156GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
ELR harr rep2 SRR1802157GSE65885Cancer Mechanism Fibroblast Cell Ji et al. 26900662 2016
GM10847 Rep1 SRR1803146GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM12878 Rep1 SRR1803147GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM12878 Rep2 SRR1803148GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM12890 Rep1 SRR1803149GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM12890 Rep2 SRR1803150GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM12891 Rep1 SRR1803151GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM12891 Rep2 SRR1803152GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM12892 Rep1 SRR1803153GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM12892 Rep2 SRR1803154GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18489 Rep1 SRR1803155GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18499 Rep1 SRR1803156GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18499 Rep2 SRR1803157GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18501 Rep1 SRR1803158GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18501 Rep2 SRR1803159GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18502 Rep1 SRR1803160GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18504 Rep2 SRR1803161GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18504 Rep3 SRR1803162GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18505 Rep1 SRR1803163GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18511 Rep1 SRR1803164GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18519 Rep1 SRR1803165GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18522 Rep1 SRR1803166GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18522 Rep2 SRR1803167GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18523 Rep1 SRR1803168GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18523 Rep3 SRR1803169GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18526 Rep1 SRR1803170GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18870 Rep2 SRR1803171GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18951 Rep1 SRR1803172GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18951 Rep2 SRR1803173GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18951 Rep3 SRR1803174GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19098 Rep1 SRR1803175GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19098 Rep2 SRR1803176GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19099 Rep1 SRR1803177GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19137 Rep1 SRR1803178GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19137 Rep2 SRR1803179GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19138 Rep1 SRR1803180GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19138 Rep2 SRR1803181GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19139 Rep2 SRR1803182GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19193 Rep1 SRR1803183GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19200 Rep2 SRR1803184GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19201 Rep1 SRR1803185GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19238 Rep1 SRR1803186GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19238 Rep3 SRR1803187GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19239 Rep1 SRR1803188GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19239 Rep2 SRR1803189GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19240 Rep1 SRR1803190GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19240 Rep2 SRR1803191GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM19240 Rep3 SRR1803192GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18526 Rep2 SRR1803193GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18526 Rep3 SRR1803194GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
GM18507 Rep1 SRR1803195GSE65912Translational Regulation Mechanism Lymphoblastoid Cell Cenik et al. 26297486 2015
C.rp.rep1 SRR1916542GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
Myc.rp.rep1 SRR1916543GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
C.rp.rep2.lane1 SRR1916544GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
C.rp.rep2.lane2 SRR1916545GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
Myc.rp.rep2.lane1 SRR1916546GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
Myc.rp.rep2.lane2 SRR1916547GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
Torin.rp.lane1 SRR1916548GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
Torin.rp.lane2 SRR1916549GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
Myc.Torin.rp.lane1 SRR1916550GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
Myc.Torin.rp.lane2 SRR1916551GSE66927Cancer Mechanism U2OS Cell Elkon et al. 26538417 2015
Ribosome footprints from G1 cells, pretreated with cycloheximide 1 SRR1976443GSE67902Cell Cycle RPE-1 Cell Tanenbaum et al. 26305499 2015
Ribosome footprints from G1 cells, pretreated with cycloheximide 2 SRR1976444GSE67902Cell Cycle RPE-1 Cell Tanenbaum et al. 26305499 2015
Ribosome footprints from G2 cells, pretreated with cycloheximide 1 SRR1976445GSE67902Cell Cycle RPE-1 Cell Tanenbaum et al. 26305499 2015
Ribosome footprints from G2 cells, pretreated with cycloheximide 2 SRR1976446GSE67902Cell Cycle RPE-1 Cell Tanenbaum et al. 26305499 2015
Ribosome footprints from M cells, pretreated with cycloheximide 1 SRR1976447GSE67902Cell Cycle RPE-1 Cell Tanenbaum et al. 26305499 2015
Ribosome footprints from M cells, pretreated with cycloheximide 2 SRR1976448GSE67902Cell Cycle RPE-1 Cell Tanenbaum et al. 26305499 2015
lympho-directExtract SRR1979671GSE68008RPF Methodology Lymphocytes Reid et al. 26164698 2015
lympho-pelleted SRR1979672GSE68008RPF Methodology Lymphocytes Reid et al. 26164698 2015
6 h infection cytosol ribosome profiling (Rep 1) SRR2052911GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h infection ER ribosome profiling (Rep 1) SRR2052912GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h infection cytosol ribosome profiling (Rep 1) SRR2052913GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h infection ER ribosome profiling (Rep 1) SRR2052914GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h infection cytosol ribosome profiling (Rep 1) SRR2052915GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h infection ER ribosome profiling (Rep 1) SRR2052916GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
40 h infection cytosol ribosome profiling (Rep 1) SRR2052917GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
40 h infection ER ribosome profiling (Rep 1) SRR2052918GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Interferon treatment cytosol ribosome profiling (Rep 1) SRR2052919GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Interferon treatment ER ribosome profiling (Rep 1) SRR2052920GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected cytosol ribosome profiling (Rep 1) SRR2052921GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected ER ribosome profiling (Rep 1) SRR2052922GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h infection cytosol ribosome profiling (Rep 2) SRR2052923GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h infection ER ribosome profiling (Rep 2) SRR2052924GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h infection cytosol ribosome profiling (Rep 2) SRR2052925GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h infection ER ribosome profiling (Rep 2) SRR2052926GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h infection cytosol ribosome profiling (Rep 2) SRR2052927GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h infection ER ribosome profiling (Rep 2) SRR2052928GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
40 h infection cytosol ribosome profiling (Rep 2) SRR2052929GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
40 h infection ER ribosome profiling (Rep 2) SRR2052930GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Interferon treatment cytosol ribosome profiling (Rep 2) SRR2052931GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Interferon treatment ER ribosome profiling (Rep 2) SRR2052932GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected cytosol ribosome profiling (Rep 2) SRR2052933GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected ER ribosome profiling (Rep 2) SRR2052934GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h infection cytosol ribosome profiling (Rep 3) SRR2052935GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h infection ER ribosome profiling (Rep 3) SRR2052936GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h infection cytosol ribosome profiling (Rep 3) SRR2052937GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h infection ER ribosome profiling (Rep 3) SRR2052938GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h infection cytosol ribosome profiling (Rep 3) SRR2052939GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h infection ER ribosome profiling (Rep 3) SRR2052940GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
40 h infection cytosol ribosome profiling (Rep 3) SRR2052941GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
40 h infection ER ribosome profiling (Rep 3) SRR2052942GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Interferon treatment cytosol ribosome profiling (Rep 3) SRR2052943GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Interferon treatment ER ribosome profiling (Rep 3) SRR2052944GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected cytosol ribosome profiling (Rep 3) SRR2052945GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected ER ribosome profiling (Rep 3) SRR2052946GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h infection cytosol ribosome profiling (Rep 4) SRR2052947GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h infection ER ribosome profiling (Rep 4) SRR2052948GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h infection cytosol ribosome profiling (Rep 4) SRR2052949GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h infection ER ribosome profiling (Rep 4) SRR2052950GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h infection cytosol ribosome profiling (Rep 4) SRR2052951GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h infection ER ribosome profiling (Rep 4) SRR2052952GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
40 h infection cytosol ribosome profiling (Rep 4) SRR2052953GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
40 h infection ER ribosome profiling (Rep 4) SRR2052954GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Interferon treatment cytosol ribosome profiling (Rep 4) SRR2052955GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Interferon treatment ER ribosome profiling (Rep 4) SRR2052956GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected cytosol ribosome profiling (Rep 4) SRR2052957GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected ER ribosome profiling (Rep 4) SRR2052958GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h DENV1 infection Total cell lysate ribosome profiling (rep 1) SRR2052983GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h DENV1 infection Total cell lysate ribosome profiling (rep 1) SRR2052984GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
48 h DENV1 infection Total cell lysate ribosome profiling (rep 1) SRR2052985GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h DENV1 infection Total cell lysate ribosome profiling (rep 1) SRR2052986GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
72 h DENV1 infection Total cell lysate ribosome profiling (rep 1) SRR2052987GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected Total cell lysate ribosome profiling (rep 1) SRR2052988GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h DENV1 infection Total cell lysate ribosome profiling (rep 2) SRR2052989GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h DENV1 infection Total cell lysate ribosome profiling (rep 2) SRR2052990GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
48 h DENV1 infection Total cell lysate ribosome profiling (rep 2) SRR2052991GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h DENV1 infection Total cell lysate ribosome profiling (rep 2) SRR2052992GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
72 h DENV1 infection Total cell lysate ribosome profiling (rep 2) SRR2052993GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
Uninfected Total cell lysate ribosome profiling (rep 2) SRR2052994GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h DENV2 infection Total cell lysate ribosome profiling (rep 1) SRR2052995GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h DENV2 infection Total cell lysate ribosome profiling (rep 1) SRR2052996GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
48 h DENV2 infection Total cell lysate ribosome profiling (rep 1) SRR2052997GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h DENV2 infection Total cell lysate ribosome profiling (rep 1) SRR2052998GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
72 h DENV2 infection Total cell lysate ribosome profiling (rep 1) SRR2052999GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
12 h DENV2 infection Total cell lysate ribosome profiling (rep 2) SRR2053000GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
24 h DENV2 infection Total cell lysate ribosome profiling (rep 2) SRR2053001GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
48 h DENV2 infection Total cell lysate ribosome profiling (rep 2) SRR2053002GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
6 h DENV2 infection Total cell lysate ribosome profiling (rep 2) SRR2053003GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
72 h DENV2 infection Total cell lysate ribosome profiling (rep 2) SRR2053004GSE69602Virus Infection, Stress Condition NA Reid et al. 29321322 2018
footprints uninfected fibroblasts SRR2064017GSE69906Virus Infection Fibroblast Cell Tirosh et al. 26599541 2015
footprints uninfected fibroblasts treated with type 1 interferon SRR2064018GSE69906Virus Infection Fibroblast Cell Tirosh et al. 26599541 2015
footprints fibroblasts infected with irradiated virus SRR2064019GSE69906Virus Infection Fibroblast Cell Tirosh et al. 26599541 2015
footprints fibroblasts infected for 5hr SRR2064020GSE69906Virus Infection Fibroblast Cell Tirosh et al. 26599541 2015
footprints fibroblasts infected for 12hr SRR2064021GSE69906Virus Infection Fibroblast Cell Tirosh et al. 26599541 2015
footprints fibroblasts infected for 24hr SRR2064022GSE69906Virus Infection Fibroblast Cell Tirosh et al. 26599541 2015
footprints fibroblasts infected for 72hr SRR2064023GSE69906Virus Infection Fibroblast Cell Tirosh et al. 26599541 2015
Kidney normal tissue 1 tumor 2 RP SRR2064430GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney normal tissue 2 tumor 2 RP SRR2064431GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue 1 tumor 2 RP SRR2064432GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue 2 tumor 2 RP SRR2064433GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue 3 tumor 2 RP SRR2064434GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue 4 tumor 2 RP SRR2064435GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
MCF7 control batch7 RP SRR2064449GSE69923Stress Condition, Cancer Mechanism MCF7 Cell Loayza-Puch et al. 26878238 2016
T47D control batch7 RP SRR2064450GSE69923Stress Condition, Cancer Mechanism T47D Cell Loayza-Puch et al. 26878238 2016
MDAMB231 control batch7 RP SRR2064451GSE69923Stress Condition, Cancer Mechanism MDA-MB-231 Cell Loayza-Puch et al. 26878238 2016
Hs578t control batch7 RP SRR2064452GSE69923Stress Condition, Cancer Mechanism Hs578T Cell Loayza-Puch et al. 26878238 2016
MCF7 Glutamine starvation batch7 RP SRR2064453GSE69923Stress Condition, Cancer Mechanism MCF7 Cell Loayza-Puch et al. 26878238 2016
T47D Glutamine starvation batch7 RP SRR2064454GSE69923Stress Condition, Cancer Mechanism T47D Cell Loayza-Puch et al. 26878238 2016
MDAMB231 Glutamine starvation batch7 RP SRR2064455GSE69923Stress Condition, Cancer Mechanism MDA-MB-231 Cell Loayza-Puch et al. 26878238 2016
Hs578t Glutamine starvation batch7 RP SRR2064456GSE69923Stress Condition, Cancer Mechanism Hs578T Cell Loayza-Puch et al. 26878238 2016
MCF10A torin RP SRR2064566_67GSE59816Cancer Mechanism, Stress Condition MCF10A Cell Loayza-Puch et al. 26878238 2016
Ribosome profiling SiControl-RPF SRR2075417GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling SiControl-input-poly(A) SRR2075418GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling SiMETTL3-RPF SRR2075419GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
Ribosome profiling SiMETTL3-input-poly(A) SRR2075420GSE63591mRNA Modification HeLa Cell Wang et al. 26046440 2015
ribo DMSO replicate1 [Sample 1] SRR2075925GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo DMSO replicate2 [Sample 2] SRR2075926GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo RocA003 [Sample 3] SRR2075927GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo RocA03 [Sample 4] SRR2075928GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo RocA3 [Sample 5] SRR2075929GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo PP242 [Sample 11] SRR2075935GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo DMSO replicate3 [Sample 12] SRR2075936GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo DMSO replicate4 [Sample 13] SRR2075937GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo Hipp001 [Sample 14] SRR2075938GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo Hipp1 [Sample 15] SRR2075939GSE70211Translational Regulation Mechanism HEK293 Cell Iwasaki et al. 27309803 2016
ribo hES shControl-replicate1 SRR2086025GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo hES shControl-replicate2 SRR2086026GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo hES shKBTBD8 SRR2086027GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo hES shTCOF1 SRR2086028GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND3 shControl SRR2086029GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND3 shKBTBD8 SRR2086030GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
ribo ND3 shTCOF1 SRR2086031GSE62247Protein Stability Embryonic Stem Cell Werner et al. 26399832 2015
Rluc control ribosome profiling rep1 SRR2096964GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
DDX3 WT ribosome profiling rep1 SRR2096965GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
DDX3 R534H ribosome profiling rep1 SRR2096966GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
Rluc control ribosome profiling with sodium arsenite rep1 SRR2096967GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
DDX3 WT ribosome profiling with sodium arsenite rep1 SRR2096968GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
DDX3 R534H ribosome profiling with sodium arsenite rep1 SRR2096969GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
Rluc control ribosome profiling rep2 SRR2096970GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
DDX3 WT ribosome profiling rep2 SRR2096971GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
DDX3 R534H ribosome profiling rep2 SRR2096972GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
Rluc control ribosome profiling with sodium arsenite rep2 SRR2096973GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
DDX3 WT ribosome profiling with sodium arsenite rep2 SRR2096974GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
DDX3 R534H ribosome profiling with sodium arsenite rep2 SRR2096975GSE70802Translational Regulation Mechanism, Stress Condition HEK293 Cell Oh et al. 27058758 2016
CHL-1 + CRISPR SRR2146889GSE71763Stress Condition CHL-1 Cell Siprashvili et al. 26595770 2016
CHL-1 + CRISPR rRNA removed SRR2146890GSE71763Stress Condition CHL-1 Cell Siprashvili et al. 26595770 2016
CHL-1 untreated SRR2146891GSE71763Stress Condition CHL-1 Cell Siprashvili et al. 26595770 2016
CHL-1 untreated - rRNA removed SRR2146892GSE71763Stress Condition CHL-1 Cell Siprashvili et al. 26595770 2016
10mM AZC + MG132 SRR2146893GSE71763Stress Condition CHL-1 Cell Siprashvili et al. 26595770 2016
10mM AZC + MG132 - rRNA removed SRR2146894GSE71763Stress Condition CHL-1 Cell Siprashvili et al. 26595770 2016
ribosome profiling SRR2433794GSE73136RPF Methodology HEK293 Cell Calviello et al. 26657557 2016
M Ribo-Seq Exp1 Rep1 SRR2536838GSE73565Cell Cycle HeLa Cell Zur et al. 26898226 2016
M Ribo-Seq Exp1 Rep2 SRR2536839GSE73565Cell Cycle HeLa Cell Zur et al. 26898226 2016
M Ribo-Seq Exp1 Rep3 SRR2536840_41GSE73565Cell Cycle HeLa Cell Zur et al. 26898226 2016
M Ribo-Seq Exp2 Rep1 SRR2536842_46GSE73565Cell Cycle HeLa Cell Zur et al. 26898226 2016
G1 Ribo-Seq Exp1 Rep1 SRR2536856GSE73565Cell Cycle HeLa Cell Zur et al. 26898226 2016
G1 Ribo-Seq Exp1 Rep2 SRR2536857GSE73565Cell Cycle HeLa Cell Zur et al. 26898226 2016
G1 Ribo-Seq Exp1 Rep3 SRR2536858_62GSE73565Cell Cycle HeLa Cell Zur et al. 26898226 2016
G1 Ribo-Seq Exp2 Rep1 SRR2536863_67GSE73565Cell Cycle HeLa Cell Zur et al. 26898226 2016
Lactimidomycin treated Jurkat cells SRR2732970GSE74279Protein Stability Jurkat T-lymphocytes Gawron et al. 26893308 2016
Cycloheximide treated Jurkat cells SRR2733100GSE74279Protein Stability Jurkat T-lymphocytes Gawron et al. 26893308 2016
PC3 control batch1 RP SRR2873530_31GSE74510Stress Condition PC3 Cell Loayza-Puch et al. 26878238 2016
PC3 ASNase batch1 RP SRR2873532_33GSE74510Stress Condition PC3 Cell Loayza-Puch et al. 26878238 2016
PC3 control batch2 RP SRR2873534_35GSE74510Stress Condition PC3 Cell Loayza-Puch et al. 26878238 2016
PC3 ASNase 1 batch2 RP SRR2873536_37GSE74510Stress Condition PC3 Cell Loayza-Puch et al. 26878238 2016
PC3 ASNase 2 batch2 RP SRR2873538_39GSE74510Stress Condition PC3 Cell Loayza-Puch et al. 26878238 2016
MCF7 SG RP SRR2873686GSE74511RPF Methodology MCF7 Cell Loayza-Puch et al. 26878238 2016
MCF7 IP50 RP SRR2873687GSE74511RPF Methodology MCF7 Cell Loayza-Puch et al. 26878238 2016
MCF7 IP150 RP SRR2873688GSE74511RPF Methodology MCF7 Cell Loayza-Puch et al. 26878238 2016
SUM159PT in vitro 1 repl1 RP SRR2873689_90GSE74512Translational Regulation Mechanism SUM159PT Cell Loayza-Puch et al. 26878238 2016
SUM159PT in vitro 2 repl1 RP SRR2873691_92GSE74512Translational Regulation Mechanism SUM159PT Cell Loayza-Puch et al. 26878238 2016
SUM159PT in vivo 1 repl1 RP SRR2873693_94GSE74512Translational Regulation Mechanism SUM159PT Cell Loayza-Puch et al. 26878238 2016
SUM159PT in vivo 2 repl1 RP SRR2873695_96GSE74512Translational Regulation Mechanism SUM159PT Cell Loayza-Puch et al. 26878238 2016
SUM159PT in vitro 1 repl2 RP SRR2873697_98GSE74512Translational Regulation Mechanism SUM159PT Cell Loayza-Puch et al. 26878238 2016
SUM159PT in vitro 2 repl2 RP SRR2873699_700GSE74512Translational Regulation Mechanism SUM159PT Cell Loayza-Puch et al. 26878238 2016
SUM159PT in vivo 1 repl2 RP SRR2873701_02GSE74512Translational Regulation Mechanism SUM159PT Cell Loayza-Puch et al. 26878238 2016
SUM159PT in vivo 2 repl2 RP SRR2873703_04GSE74512Translational Regulation Mechanism SUM159PT Cell Loayza-Puch et al. 26878238 2016
Kidney normal tissue tumor 3 RP SRR2874123_24GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney tumor tissue tumor 3 RP SRR2874125_26GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
Kidney normal tissue tumor 4 RP SRR2874127_28GSE59820Cancer Mechanism Tumor Tissue Loayza-Puch et al. 26878238 2016
MCF10A starvation RP SRR2874255_56GSE59816Stress Condition MCF10A Cell Loayza-Puch et al. 26878238 2016
GM19204 ribosome protected fragments SRR2954800GSE75290Translational Regulation Mechanism, RPF Methodology Lymphoblastoid Cell Raj et al. 27232982 2016
GM19238 ribosome protected fragments SRR2954801GSE75290Translational Regulation Mechanism, RPF Methodology Lymphoblastoid Cell Raj et al. 27232982 2016
D2DJAACXX 1 SRR2991181GSE75947RPF Methodology SH-SY5Y Cell Chun et al. 27884106 2016
Ribosome protected fragments (RPF) of TSC2+/+ control generated from hESC cell line 2, Biological Replicate 1 SRR3208864GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ control generated from hESC cell line 2, Biological Replicate 2 SRR3208865GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/- cell line generated from hESC cell line 2, Biological Replicate 1 SRR3208866GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/- cell line generated from hESC cell line 2, Biological Replicate 2 SRR3208867GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cell line generated from hESC cell line 2, Biological Replicate 1 SRR3208868GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cell line generated from hESC cell line 2, Biological Replicate 2 SRR3208869GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ control generated from hESC cell line 3, Biological Replicate 1 SRR3208870GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ control generated from hESC cell line 3, Biological Replicate 2 SRR3208871GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/- cell line generated from hESC cell line 3, Biological Replicate 1 SRR3208872GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/- cell line generated from hESC cell line 3, Biological Replicate 2 SRR3208873GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cell line generated from hESC cell line 3, Biological Replicate 1 SRR3208874GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cell line generated from hESC cell line 3, Biological Replicate 2 SRR3208875GSE78959mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 15) treated with AZD-8055, Biological Replicate 1 SRR3208881GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 15) treated with AZD-8055, Biological Replicate 2 SRR3208882GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 15) treated with DMSO, Biological Replicate 1 SRR3208885GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 15) treated with DMSO, Biological Replicate 2 SRR3208886GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 15) treated with Rapamycin, Biological Replicate 1 SRR3208889GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 15) treated with Rapamycin, Biological Replicate 2 SRR3208890GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 16) treated with AZD-8055, Biological Replicate 1 SRR3208893GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 16) treated with AZD-8055, Biological Replicate 2 SRR3208894GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 16) treated with DMSO, Biological Replicate 1 SRR3208897GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 16) treated with DMSO, Biological Replicate 2 SRR3208898GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 16) treated with Rapamycin, Biological Replicate 1 SRR3208901GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2+/+ cells (number 16) treated with Rapamycin, Biological Replicate 2 SRR3208902GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 19) treated with AZD-8055, Biological Replicate 1 SRR3208905GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 19) treated with AZD-8055, Biological Replicate 2 SRR3208906GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 19) treated with DMSO, Biological Replicate 1 SRR3208909GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 19) treated with DMSO, Biological Replicate 2 SRR3208910GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 19) treated with Rapamycin, Biological Replicate 1 SRR3208913GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 19) treated with Rapamycin, Biological Replicate 2 SRR3208914GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 20) treated with AZD-8055, Biological Replicate 1 SRR3208917GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 20) treated with AZD-8055, Biological Replicate 2 SRR3208918GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 20) treated with DMSO, Biological Replicate 1 SRR3208921GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 20) treated with DMSO, Biological Replicate 2 SRR3208922GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 20) treated with Rapamycin, Biological Replicate 1 SRR3208925GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
Ribosome protected fragments (RPF) of TSC2-/- cells (number 20) treated with Rapamycin, Biological Replicate 2 SRR3208926GSE78960mTOR Pathway, Disease ESC Cell Costa et al. 27052171 2016
S phase ribosome profiling replicate 1 SRR3306583GSE79664Cell Cycle, Translational Regulation Mechanism HeLa Cell Park et al. 27153541 2016
S phase ribosome profiling replicate 2 SRR3306584GSE79664Cell Cycle, Translational Regulation Mechanism HeLa Cell Park et al. 27153541 2016
M phase ribosome profiling replicate 1 SRR3306585GSE79664Cell Cycle, Translational Regulation Mechanism HeLa Cell Park et al. 27153541 2016
M phase ribosome profiling replicate 2 SRR3306586GSE79664Cell Cycle, Translational Regulation Mechanism HeLa Cell Park et al. 27153541 2016
M phase ribosome profiling synchronized by shake off SRR3306587GSE79664Cell Cycle, Translational Regulation Mechanism HeLa Cell Park et al. 27153541 2016
Asynchronous cell ribosome profiling 1 SRR3306588GSE79664Cell Cycle, Translational Regulation Mechanism HeLa Cell Park et al. 27153541 2016
Asynchronous cell ribosome profiling 2 SRR3306589GSE79664Cell Cycle, Translational Regulation Mechanism HeLa Cell Park et al. 27153541 2016
Ribo-Seq (HEK293 cells) SRR3356523GSE80156RPF Methodology, Translational Regulation Mechanism HEK293 Cell Saikia et al. 27613579 2016
Ribo-Seq (MEF cells) SRR3356524GSE80156RPF Methodology, Translational Regulation Mechanism MEF Cell Saikia et al. 27613579 2016
Ribo-Seq (MEF cells, WT 18S rRNA) SRR3356525GSE80156RPF Methodology, Translational Regulation Mechanism MEF Cell Saikia et al. 27613579 2016
Ribo-Seq (MEF cells, mutant 18S rRNA) SRR3356526GSE80156RPF Methodology, Translational Regulation Mechanism MEF Cell Saikia et al. 27613579 2016
Ribo-Seq (HEK393T, control sample for Methionine Starvation) SRR3356527GSE80156RPF Methodology, Translational Regulation Mechanism HEK293 Cell Saikia et al. 27613579 2016
Ribo-Seq (HEK393T, Methionine Starvation) SRR3356528GSE80156RPF Methodology, Translational Regulation Mechanism HEK293 Cell Saikia et al. 27613579 2016
mRNA-assocaited with monosome in the control cells SRR3510616GSE81469Translational Regulation Mechanism MCF7 Cell Bai et al. 27477389 2016
mRNA-assocatied with polyosme in the control cells SRR3510617GSE81469Translational Regulation Mechanism MCF7 Cell Bai et al. 27477389 2016
mRNA-associated with monosome in hCINAP overexpressed cells SRR3510618GSE81469Translational Regulation Mechanism MCF7 Cell Bai et al. 27477389 2016
mRNA-associated with polysome in hCINAP overexpressed cells SRR3510619GSE81469Translational Regulation Mechanism MCF7 Cell Bai et al. 27477389 2016
fp chx uninf s3 SRR3623932GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
fp chx 2hr s3 SRR3623933GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
fp chx 4hr s3 SRR3623934GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
fp chx 8hr s3 SRR3623935GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
fp chx uninf s4 SRR3623936GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
fp chx 2hr s4 SRR3623937GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
fp chx 4hr s4 SRR3623938GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
fp chx 8hr s4 SRR3623939GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
fp harr 8hr s2 SRR3632670GSE82232Virus Infection A549 Cell Bercovich-Kinori et al. 27525483 2016
Footprint for vehicle treated PC3 cells, replicate #1. SRR403883GSE35469Cancer Mechanism, mTOR Pathway PC3 Cell Hsieh et al. 22367541 2012
Footprint for rapamycin treated PC3 cells, replicate #1. SRR403885GSE35469Cancer Mechanism, mTOR Pathway PC3 Cell Hsieh et al. 22367541 2012
Footprint for PP242 treated PC3 cells, replicate #1. SRR403887GSE35469Cancer Mechanism, mTOR Pathway PC3 Cell Hsieh et al. 22367541 2012
Footprint for vehicle treated PC3 cells, replicate #2. SRR403889GSE35469Cancer Mechanism, mTOR Pathway PC3 Cell Hsieh et al. 22367541 2012
Footprint for rapamycin treated PC3 cells, replicate #2. SRR403891GSE35469Cancer Mechanism, mTOR Pathway PC3 Cell Hsieh et al. 22367541 2012
Footprint for PP242 treated PC3 cells, replicate #2. SRR403893GSE35469Cancer Mechanism, mTOR Pathway PC3 Cell Hsieh et al. 22367541 2012
Primary PLT Ribo Rest SRR4045263GSE85864Translational Regulation Mechanism Human Platelets Mills et al. 27681415 2016
Primary PLT Ribo Thr1 SRR4045264GSE85864Translational Regulation Mechanism Human Platelets Mills et al. 27681415 2016
Primary PLT Ribo Thr2 SRR4045265GSE85864Translational Regulation Mechanism Human Platelets Mills et al. 27681415 2016
Retic Ribo Gold rep1 SRR4045266GSE85864Translational Regulation Mechanism Primary Human Reticulocytes Mills et al. 27681415 2016
Retic Ribo Gold rep2 SRR4045267GSE85864Translational Regulation Mechanism Primary Human Reticulocytes Mills et al. 27681415 2016
Retic Ribo Globin rep1 SRR4045268GSE85864Translational Regulation Mechanism Primary Human Reticulocytes Mills et al. 27681415 2016
Retic Ribo Globin rep2 SRR4045269GSE85864Translational Regulation Mechanism Primary Human Reticulocytes Mills et al. 27681415 2016
Meg01 Ribo SRR4045276GSE85864Translational Regulation Mechanism Primary Human Reticulocytes Mills et al. 27681415 2016
PLP Ribo SRR4045277GSE85864Translational Regulation Mechanism Platelet-like Particles Mills et al. 27681415 2016
PLP highsalt Ribo SRR4045278GSE85864Translational Regulation Mechanism Platelet-like Particles Mills et al. 27681415 2016
YTHDF3-RIP-IP-repl.1 SRR4098159GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
YTHDF3-RIP-IP-repl.2 SRR4098160GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
YTHDF3-RIP-input-polyA SRR4098161GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
YTHDF3-RIP-input-ribominus SRR4098162GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling-rep1-siControl-RPF SRR4098163GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling-rep1-siControl-input SRR4098164GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling-rep1-siYTHDF3-RPF SRR4098165GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling-rep1-siYTHDF3-input SRR4098166GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling-rep2-siControl-RPF SRR4098167GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling-rep2-siControl-input SRR4098168GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling-rep2-siYTHDF3-RPF SRR4098169GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling-rep2-siYTHDF3-input SRR4098170GSE86214mRNA Modification HeLa Cell Shi et al. 28106072 2017
Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin SRR4293693GSE87328Translational Regulation Mechanism HCT116 Cell et al. 28541577 2017
Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide SRR4293694GSE87328Translational Regulation Mechanism HCT116 Cell et al. 28541577 2017
Ribosome profiling of control HCT116 cells treated with lactimidomycin SRR4293695GSE87328Translational Regulation Mechanism HCT116 Cell et al. 28541577 2017
Ribosome profiling of control HCT116 cells treated with cycloheximide SRR4293696GSE87328Translational Regulation Mechanism HCT116 Cell et al. 28541577 2017
HEK293 low SRR493747GSE37744RPF Methodology HEK293 Cell Ingolia et al. 22836135 2012
HEK293 medium SRR493748GSE37744RPF Methodology HEK293 Cell Ingolia et al. 22836135 2012
HEK293 high SRR493749GSE37744RPF Methodology HEK293 Cell Ingolia et al. 22836135 2012
WT-1 SRR5144785GSE93133Translational Regulation Mechanism HAP1 Cell Malecki et al. 28108655 2017
WT-2 SRR5144786GSE93133Translational Regulation Mechanism HAP1 Cell Malecki et al. 28108655 2017
METTL21B-1 SRR5144787GSE93133Translational Regulation Mechanism HAP1 Cell Malecki et al. 28108655 2017
METTL21B-2 SRR5144788GSE93133Translational Regulation Mechanism HAP1 Cell Malecki et al. 28108655 2017
THP-1 cyclo rep#1 SRR525273GSE39561Translational Regulation Mechanism THP-1 Cell Fritsch et al. 22879431 2012
THP-1 cyclo rep#2 SRR525274GSE39561Translational Regulation Mechanism THP-1 Cell Fritsch et al. 22879431 2012
THP-1 cyclo rep#3 SRR525275GSE39561Translational Regulation Mechanism THP-1 Cell Fritsch et al. 22879431 2012
THP-1 puro rep#1 SRR525276GSE39561Translational Regulation Mechanism THP-1 Cell Fritsch et al. 22879431 2012
THP-1 puro rep#2 SRR525277GSE39561Translational Regulation Mechanism THP-1 Cell Fritsch et al. 22879431 2012
THP-1 puro rep#3 SRR525278GSE39561Translational Regulation Mechanism THP-1 Cell Fritsch et al. 22879431 2012
Footprints from cells infected with HCMV for 24hr, pretreated with cycloheximide SRR592954GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 72hr, pretreated with cycloheximide SRR592955GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 72hr, pretreated with cycloheximide, replicate SRR592956GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 5hr, pretreated with Harringtonine SRR592957GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 72hr, pretreated with Harringtonine SRR592958GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 5hr, pretreated with LTM SRR592959GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 72hr, pretreated with LTM SRR592960GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 5hr, no drug pretreatment SRR592961GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 72hr, no drug pretreatment SRR592962GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Footprints from cells infected with HCMV for 5hr, pretreated with cycloheximide SRR609197GSE41605Virus Infection Human Foreskin Fibroblast Cell Stern-Ginossar et al. 23180859 2012
Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #1 SRR618770SRP014629Translational Regulation Mechanism HEK293 Cell Lee et al. 22927429 2012
Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #2 SRR618771SRP014629Translational Regulation Mechanism HEK293 Cell Lee et al. 22927429 2012
Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #1 SRR618772SRP014629Translational Regulation Mechanism HEK293 Cell Lee et al. 22927429 2012
Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #2 SRR618773SRP014629Translational Regulation Mechanism HEK293 Cell Lee et al. 22927429 2012
Ribosome profiling of HEK293 cells no treatment control biological replicate 1 SRR619082SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells no treatment control biological replicate 2 SRR619083SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 1 SRR619084SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 2 SRR619085SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells treated with AZC only SRR619086SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells treated with MG132 only SRR619087SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells treated with DMSO SRR619088_89SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells treated with VER SRR619090_91SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells treated with PES SRR619092_93SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HEK293 cells treated with GA SRR619094_95SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of FRB*-GFP HEK293 cells no treatment SRR619096SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of FRB*-GFP HEK293 cells treated with rapalog SRR619097SRP017263Translational Regulation Mechanism, Stress Condition HEK293 Cell Liu et al. 23290916 2013
Ribosome profiling of HeLa-tTA cells NOT expressing K71M SRR619098SRP017263Translational Regulation Mechanism, Stress Condition HeLa Cell Liu et al. 23290916 2013
Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 1 SRR619099SRP017263Translational Regulation Mechanism, Stress Condition HeLa Cell Liu et al. 23290916 2013
Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 2 SRR619100SRP017263Translational Regulation Mechanism, Stress Condition HeLa Cell Liu et al. 23290916 2013
C1.rp SRR627620GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
C2.rp SRR627621GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
Q1.rp SRR627622GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
Q2.rp SRR627623GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
preS.rp SRR627624GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
S.rp SRR627625GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
C3.rp SRR627626GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
Tr.rp SRR627627GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
C.rp SRR810100GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
Nutlin.2h.rp SRR810101GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
Nutlin.4h.rp SRR810102GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
Nutlin.6h.rp SRR810103GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
Nutlin.19h.rp SRR810104GSE45833Cancer Mechanism BJ Primary Fibroblast Cell Loayza-Puch et al. 23594524 2013
0h MM1S untreated ribosome footprint SRR931815GSE48785Stress Condition, Apoptosis MM1.S Cell Wiita et al. 24171104 2013
1.5h MM1S 20nM bortezomib ribosome footprint SRR931817GSE48785Stress Condition, Apoptosis MM1.S Cell Wiita et al. 24171104 2013
3h MM1S 20nM bortezomib ribosome footprint SRR931819GSE48785Stress Condition, Apoptosis MM1.S Cell Wiita et al. 24171104 2013
6h MM1S 20nM bortezomib ribosome footprint SRR931821GSE48785Stress Condition, Apoptosis MM1.S Cell Wiita et al. 24171104 2013
9h MM1S 20nM bortezomib ribosome footprint SRR931823GSE48785Stress Condition, Apoptosis MM1.S Cell Wiita et al. 24171104 2013
12h MM1S 20nM bortezomib ribosome footprint SRR931825GSE48785Stress Condition, Apoptosis MM1.S Cell Wiita et al. 24171104 2013
BJ RP rep1 SRR935448GSE48933Disease, Mitochondrial Translation BJ Primary Fibroblast Cell Rooijers et al. 24301020 2013
BJ RP rep2 SRR935449GSE48933Disease, Mitochondrial Translation BJ Primary Fibroblast Cell Rooijers et al. 24301020 2013
Cybrid control RP rep1 SRR935452GSE48933Disease, Mitochondrial Translation Cybrid Cell Rooijers et al. 24301020 2013
Cybrid control RP rep2 SRR935453GSE48933Disease, Mitochondrial Translation Cybrid Cell Rooijers et al. 24301020 2013
Ribosome profiling rep1-SiControl-RPF C1 SRR944653GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep1-SiControl-input-polyA C2 SRR944654GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep1-SiYTHDF2-RPF C3 SRR944655GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep1-SiYTHDF2-input-polyA C4 SRR944656GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep2-SiControl-input-ribominus C7 SRR944657GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep2-SiControl-input-polyA C6 SRR944658GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep2-SiControl-RPF C5 SRR944659GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep2-SiYTHDF2-input-ribominus C10 SRR944660GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep2-SiYTHDF2-input-polyA C9 SRR944661GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling rep2-SiYTHDF2-RPF C8 SRR944662GSE49339mRNA Modification HeLa Cell Niu et al. 23453015 2013
Ribosome profiling of HEK293 cells treated with Harringtonine SRR964946SRP014629Translational Regulation Mechanism HEK293 Cell Lee et al. 22927429 2012
G1-1 synchronized HeLa cells SRR970490SRP029589Cell Cycle HeLa Cell Stumpf et al. 24120665 2013
G1-2 synchronized HeLa cells SRR970538SRP029590Cell Cycle HeLa Cell Stumpf et al. 24120665 2013
S-phase-1 HeLa cells SRR970561SRP029591Cell Cycle HeLa Cell Stumpf et al. 24120665 2013
S-phase-2 HeLa cells SRR970565SRP029592Cell Cycle HeLa Cell Stumpf et al. 24120665 2013
Mitotic-1 HeLa cells SRR970587SRP029593Cell Cycle HeLa Cell Stumpf et al. 24120665 2013
Mitotic-2 HeLa cells SRR970588SRP029594Cell Cycle HeLa Cell Stumpf et al. 24120665 2013